Tonometry_data_files Column description
The columns are as follows:
snpname: rs number
pheno: phenotype
alleles: major allele|minor allele
n11: major allele homozygote count
n12: heterozygote count
n22: minor allele homozygote count
beta12: beta coefficient comparing heterozygotes to major allele homozygotes
se.b12: se(beta12): standard error of the coefficient beta12
beta22: beta coefficient comparing minor allele homozygotes to major allele homozygotes
se.b22: se(beta22): standard error of the coefficient beta22
mean11: “least squares mean” for major allele homozygotes
se.m11: se(mean11)
mean12: “least squares mean” for heterozygotes
se.m12: se(mean12)
mean22: “least squares mean” for minor allele homozygotes
se.m22: se(mean22)
r2: model R^2: proportion of variance in the residual phenotype explained by the SNP.
anovapval: p-value for anova test of genotypes (2df)
kwpval: p-value for kruskal-wallis test of genotypes (2df)
gene: inflammation gene nearest SNP
chrom: chromosome on which SNP is found
location: base pair location of SNP on chromosome
ExactHWEp: p-value for exact test of HWE for SNP
callrate: callrate for SNP
pass.qc: did the SNP pass our quality control procedure? If TRUE, SNP was reported in the paper. If FALSE, it was not.