Tonometry_data_files Column description



The columns are as follows:



snpname: rs number

pheno: phenotype 

alleles: major allele|minor allele

n11: major allele homozygote count

n12: heterozygote count

n22: minor allele homozygote count

beta12: beta coefficient comparing heterozygotes to major allele homozygotes

se.b12: se(beta12): standard error of the coefficient beta12

beta22: beta coefficient comparing minor allele homozygotes to major allele homozygotes

se.b22: se(beta22): standard error of the coefficient beta22

mean11: “least squares mean” for major allele homozygotes

se.m11: se(mean11)

mean12: “least squares mean” for heterozygotes

se.m12: se(mean12)

mean22: “least squares mean” for minor allele homozygotes

se.m22: se(mean22)

r2: model R^2: proportion of variance in the residual phenotype explained by the SNP.

anovapval: p-value for anova test of genotypes (2df)

kwpval: p-value for kruskal-wallis test of genotypes (2df)

gene: inflammation gene nearest SNP

chrom: chromosome on which SNP is found

location: base pair location of SNP on chromosome 

ExactHWEp: p-value for exact test of HWE for SNP

callrate: callrate for SNP

pass.qc: did the SNP pass our quality control procedure?  If TRUE, SNP was reported in the paper.  If FALSE, it was not.